5.1.2. cobramod.parsing

Sub-package parsing

This package handles the download of data and transformation into dictionaries with can be later used for the creation of the corresponding COBRApy objects. Classes included in the sub-package:

  • BaseParser: Abstract class to download and parse data

  • The corresponding child classes:

    • BiocycParser

    • PlantCycParser

    • KeggParser

    • BiggParser

Read the corresponding documentation for each module and corresponding classes.

5.1.2.2. Package Contents

5.1.2.2.1. Classes

BaseParser

Helper class that provides a standard way to create an ABC using

BiocycParser

Helper class that provides a standard way to create an ABC using

PlantCycParser

Helper class that provides a standard way to create an ABC using

BiggParser

Helper class that provides a standard way to create an ABC using

KeggParser

Helper class that provides a standard way to create an ABC using
class cobramod.parsing.BaseParser

Bases: abc.ABC

Helper class that provides a standard way to create an ABC using inheritance.

class cobramod.parsing.BiocycParser

Bases: cobramod.parsing.base.BaseParser

Helper class that provides a standard way to create an ABC using inheritance.

class cobramod.parsing.PlantCycParser

Bases: cobramod.parsing.base.BaseParser

Helper class that provides a standard way to create an ABC using inheritance.

class cobramod.parsing.BiggParser

Bases: cobramod.parsing.base.BaseParser

Helper class that provides a standard way to create an ABC using inheritance.

class cobramod.parsing.KeggParser

Bases: cobramod.parsing.base.BaseParser

Helper class that provides a standard way to create an ABC using inheritance.