cobramod.parsing.solcyc
=======================

.. py:module:: cobramod.parsing.solcyc

.. autoapi-nested-parse::

   Gene parsing for SolanaCyc

   The main functions to parse Metabolites and Reactions are found in the module
   Biocyc



Attributes
----------

.. autoapisummary::

   cobramod.parsing.solcyc.debug_log


Functions
---------

.. autoapisummary::

   cobramod.parsing.solcyc.retrieve_gene_information


Module Contents
---------------

.. py:data:: debug_log

.. py:function:: retrieve_gene_information(directory, identifier, database)

   Retrieve the gene information for given reaction in a specific database

   :param directory: Directory to store and retrieve local data.
   :type directory: Path
   :param identifier: original identifier
   :type identifier: str
   :param database: Name of the database. Some options: "META", "LYCO".
                    Full list in: "https://solcyc.sgn.cornell.edu/xmlquery?dbs"
   :type database: str

   :raises HTTPError: If given reaction does not have gene information available