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CobraMod: A pathway-centric curation tool for contraint-based metabolic models

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Table of content

1. Guides
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2. Visualization
3. Database specifics
4. Requirements
5. Installation
6. Test cases
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- 6.1. Analysing shikimate production using an E. coli core model
- 6.2. Adding a synthetic homoserine cycle to a genome-scale model of E.coli to reproduce in silico experiments
7. API Reference
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- 7.1. cobramod
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  - 7.1.1.1. cobramod.core
    Toggle navigation of 7.1.1.1. cobramod.core
  - 7.1.1.2. cobramod.data
  - 7.1.1.3. cobramod.parsing
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  - 7.1.1.4. cobramod.visualization
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  - 7.1.2.1. cobramod.debug
  - 7.1.2.2. cobramod.error
  - 7.1.2.3. cobramod.retrieval
  - 7.1.2.4. cobramod.test
  - 7.1.2.5. cobramod.utils

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7.1.1.2. cobramod.data¶

7.1.1.3. cobramod.parsing

7.1.1.1.1.7. cobramod.core.summary

Copyright © 2021, Stefano Camborda, Jan-Niklas Weder

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