7.1.1.3.1.5. cobramod.parsing.plantcyc¶
Gene parsing for Plantcyc
The main functions to parse Metabolites and Reactions are found in the module Biocyc
7.1.1.3.1.5.1. Attributes¶
7.1.1.3.1.5.2. Functions¶
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Retrieve the gene information for given reaction in a specific database |
7.1.1.3.1.5.3. Module Contents¶
- cobramod.parsing.plantcyc.debug_log¶
- cobramod.parsing.plantcyc.retrieve_gene_information(directory, identifier, database)¶
Retrieve the gene information for given reaction in a specific database
- Parameters:
directory (Path) – Directory to store and retrieve local data.
identifier (str) – original identifier
database (str) – Name of the database. Some options: “META”, “ARA”. Full list in: “https://plantcyc.org/list-of-pgdbs”
- Raises:
HTTPError – If given reaction does not have gene information available